Index

_

__init__() (avid.actions.ActionBase method) (avid.actions.actionBatchGenerator.ActionBatchGenerator method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.cliBatchScheduler.CLIBatchScheduler method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.simpleScheduler.SimpleScheduler method) (avid.actions.SingleActionBase method) (avid.actions.testingScheduler.TestingScheduler method) (avid.actions.threadingScheduler.ThreadingScheduler method) (avid.actions.threadingScheduler.Worker method) (avid.common.artefact.Artefact method) (avid.common.artefact.ArtefactCollection method) (avid.common.artefact.crawler.DirectoryCrawler method) (avid.common.cliConnector.container.ContainerCLIConnectorBase method) (avid.common.cliConnector.DefaultCLIConnector method) (avid.common.cliConnector.lsf.LSFCLIConnector method) (avid.common.cliConnector.URLMappingCLIConnectorBase method) (avid.common.config_manager.SETTING_NAMES method) (avid.common.config_manager.TOOL_SETTING_NAMES method) (avid.common.console_abstraction.Console method) (avid.common.console_abstraction.ConsoleColumns method) (avid.common.console_abstraction.ConsoleConfirm method) (avid.common.console_abstraction.ConsolePadding method) (avid.common.console_abstraction.ConsolePanel method) (avid.common.console_abstraction.ConsolePretty method) (avid.common.console_abstraction.ConsolePrompt method) (avid.common.console_abstraction.ConsoleTable method) (avid.common.console_abstraction.ConsoleTraceback method) (avid.common.console_abstraction.Progress method) (avid.common.demultiplexer.Demultiplexer method) (avid.common.dvhTxtFileLoader.DVHContainer method) (avid.common.dvhTxtFileLoader.DVHType method) (avid.common.workflow.Session method) (avid.externals.doseTool.DoseProperty method) (avid.externals.doseTool.DoseToolResultContainer method) (avid.externals.pointset.PointRepresentation method) (avid.linkers.AndLinker method) (avid.linkers.caseInstanceLinker.CaseInstanceLinker method) (avid.linkers.fractionLinker.FractionLinker method) (avid.linkers.InnerLinkerBase method) (avid.linkers.keyValueLinker.CaseLinker method) (avid.linkers.keyValueLinker.KeyValueLinker method) (avid.linkers.keyValueLinker.TimePointLinker method) (avid.linkers.LinkerBase method) (avid.linkers.posLinker.PosLinker method) (avid.linkers.proximityLinker.ProximityLinker method) (avid.linkers.proximityLinker.TimePointProximityLinker method) (avid.selectors.AndSelector method) (avid.selectors.diagnosticSelector.IsInputSelector method) (avid.selectors.diagnosticSelector.IsPrimeInvalidSelector method) (avid.selectors.diagnosticSelector.RootSelector method) (avid.selectors.keyMulitValueSelector.KeyMultiValueSelector method) (avid.selectors.keyMulitValueSelector.MultiActionTagSelector method) (avid.selectors.keyMulitValueSelector.MultiCaseInstanceSelector method) (avid.selectors.keyMulitValueSelector.MultiCaseSelector method) (avid.selectors.keyMulitValueSelector.MultiFormatSelector method) (avid.selectors.keyMulitValueSelector.MultiObjectiveSelector method) (avid.selectors.keyMulitValueSelector.MultiStatSelector method) (avid.selectors.keyMulitValueSelector.MultiTimepointSelector method) (avid.selectors.keyMulitValueSelector.MultiTypeSelector method) (avid.selectors.keyValueSelector.ActionTagSelector method) (avid.selectors.keyValueSelector.CaseInstanceSelector method) (avid.selectors.keyValueSelector.CaseSelector method) (avid.selectors.keyValueSelector.DoseStatSelector method) (avid.selectors.keyValueSelector.FormatSelector method) (avid.selectors.keyValueSelector.KeyValueSelector method) (avid.selectors.keyValueSelector.ObjectiveSelector method) (avid.selectors.keyValueSelector.ResultSelector method) (avid.selectors.keyValueSelector.TimepointSelector method) (avid.selectors.keyValueSelector.TypeSelector method) (avid.selectors.LambdaSelector method) (avid.selectors.multiKeyValueSelector.MultiKeyValueSelector method) (avid.selectors.NotSelector method) (avid.selectors.OrSelector method) (avid.selectors.SelectorBase method) (avid.selectors.validitySelector.ValiditySelector method) (avid.selectors.ValidResultSelector method) (avid.sorter.BaseSorter method) (avid.sorter.keyValueSorter.KeyValueSorter method) (avid.sorter.timePointSorter.TimePointSorter method) (avid.splitter.BaseSplitter method) (avid.splitter.keyValueSplitter.CaseSplitter method) (avid.splitter.keyValueSplitter.FractionSplitter method) (avid.splitter.keyValueSplitter.KeyValueSplitter method) (avid.splitter.singleSplitter.SingleSplitter method)

A

ACC_ELEMENT (in module avid.common.artefact.defaultProps) ACTION_CLASS (in module avid.common.artefact.defaultProps) ACTION_FAILURE (avid.actions.ActionBase attribute) (avid.actions.artefactRefine.ArtefactRefineAction attribute) (avid.actions.artefactRefine.ArtefactRefineBatchAction attribute) (avid.actions.BatchActionBase attribute) (avid.actions.cliActionBase.CLIActionBase attribute) (avid.actions.dummy.DummyBatchAction attribute) (avid.actions.dummy.DummyCLIAction attribute) (avid.actions.dummy.DummyCLIBatchAction attribute) (avid.actions.dummy.DummySingleAction attribute) (avid.actions.fitting.linearfit.LinearFitAction attribute) (avid.actions.fitting.linearfit.LinearFitBatchAction attribute) (avid.actions.genericCLIAction.GenericCLIAction attribute) (avid.actions.matchpoint.combineR.combineRAction attribute) (avid.actions.matchpoint.combineR.combineRBatchAction attribute) (avid.actions.matchpoint.mapR.mapRAction attribute) (avid.actions.matchpoint.mapR.mapRBatchAction attribute) (avid.actions.matchpoint.matchR.matchRAction attribute) (avid.actions.matchpoint.matchR.matchRBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction attribute) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction attribute) (avid.actions.pointSetConversion.PointSetConversionAction attribute) (avid.actions.pointSetConversion.PointSetConversionBatchAction attribute) (avid.actions.pythonAction.PythonAction attribute) (avid.actions.pythonAction.PythonBinaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchActionV2 attribute) (avid.actions.pythonAction.PythonUnaryBatchAction attribute) (avid.actions.pythonAction.PythonUnaryStackBatchAction attribute) (avid.actions.regVarTool.RegVarToolAction attribute) (avid.actions.regVarTool.RegVarToolBatchAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction attribute) (avid.actions.rttb.doseAcc.DoseAccAction attribute) (avid.actions.rttb.doseAcc.DoseAccBatchAction attribute) (avid.actions.rttb.doseMap.DoseMapAction attribute) (avid.actions.rttb.doseMap.DoseMapBatchAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction attribute) (avid.actions.rttb.DoseTool.DoseStatBatchAction attribute) (avid.actions.rttb.DoseTool.DoseToolAction attribute) (avid.actions.rttb.imageAcc.ImageAccAction attribute) (avid.actions.rttb.imageAcc.ImageAccBatchAction attribute) (avid.actions.rttb.voxelizer.VoxelizerAction attribute) (avid.actions.rttb.voxelizer.VoxelizerBatchAction attribute) (avid.actions.SingleActionBase attribute) ACTION_INSTANCE_UID (in module avid.common.artefact.defaultProps) ACTION_PENDING (avid.actions.ActionBase attribute) (avid.actions.artefactRefine.ArtefactRefineAction attribute) (avid.actions.artefactRefine.ArtefactRefineBatchAction attribute) (avid.actions.BatchActionBase attribute) (avid.actions.cliActionBase.CLIActionBase attribute) (avid.actions.dummy.DummyBatchAction attribute) (avid.actions.dummy.DummyCLIAction attribute) (avid.actions.dummy.DummyCLIBatchAction attribute) (avid.actions.dummy.DummySingleAction attribute) (avid.actions.fitting.linearfit.LinearFitAction attribute) (avid.actions.fitting.linearfit.LinearFitBatchAction attribute) (avid.actions.genericCLIAction.GenericCLIAction attribute) (avid.actions.matchpoint.combineR.combineRAction attribute) (avid.actions.matchpoint.combineR.combineRBatchAction attribute) (avid.actions.matchpoint.mapR.mapRAction attribute) (avid.actions.matchpoint.mapR.mapRBatchAction attribute) (avid.actions.matchpoint.matchR.matchRAction attribute) (avid.actions.matchpoint.matchR.matchRBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction attribute) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction attribute) (avid.actions.pointSetConversion.PointSetConversionAction attribute) (avid.actions.pointSetConversion.PointSetConversionBatchAction attribute) (avid.actions.pythonAction.PythonAction attribute) (avid.actions.pythonAction.PythonBinaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchActionV2 attribute) (avid.actions.pythonAction.PythonUnaryBatchAction attribute) (avid.actions.pythonAction.PythonUnaryStackBatchAction attribute) (avid.actions.regVarTool.RegVarToolAction attribute) (avid.actions.regVarTool.RegVarToolBatchAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction attribute) (avid.actions.rttb.doseAcc.DoseAccAction attribute) (avid.actions.rttb.doseAcc.DoseAccBatchAction attribute) (avid.actions.rttb.doseMap.DoseMapAction attribute) (avid.actions.rttb.doseMap.DoseMapBatchAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction attribute) (avid.actions.rttb.DoseTool.DoseStatBatchAction attribute) (avid.actions.rttb.DoseTool.DoseToolAction attribute) (avid.actions.rttb.imageAcc.ImageAccAction attribute) (avid.actions.rttb.imageAcc.ImageAccBatchAction attribute) (avid.actions.rttb.voxelizer.VoxelizerAction attribute) (avid.actions.rttb.voxelizer.VoxelizerBatchAction attribute) (avid.actions.SingleActionBase attribute) ACTION_RUNNING (avid.actions.ActionBase attribute) (avid.actions.artefactRefine.ArtefactRefineAction attribute) (avid.actions.artefactRefine.ArtefactRefineBatchAction attribute) (avid.actions.BatchActionBase attribute) (avid.actions.cliActionBase.CLIActionBase attribute) (avid.actions.dummy.DummyBatchAction attribute) (avid.actions.dummy.DummyCLIAction attribute) (avid.actions.dummy.DummyCLIBatchAction attribute) (avid.actions.dummy.DummySingleAction attribute) (avid.actions.fitting.linearfit.LinearFitAction attribute) (avid.actions.fitting.linearfit.LinearFitBatchAction attribute) (avid.actions.genericCLIAction.GenericCLIAction attribute) (avid.actions.matchpoint.combineR.combineRAction attribute) (avid.actions.matchpoint.combineR.combineRBatchAction attribute) (avid.actions.matchpoint.mapR.mapRAction attribute) (avid.actions.matchpoint.mapR.mapRBatchAction attribute) (avid.actions.matchpoint.matchR.matchRAction attribute) (avid.actions.matchpoint.matchR.matchRBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction attribute) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction attribute) (avid.actions.pointSetConversion.PointSetConversionAction attribute) (avid.actions.pointSetConversion.PointSetConversionBatchAction attribute) (avid.actions.pythonAction.PythonAction attribute) (avid.actions.pythonAction.PythonBinaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchActionV2 attribute) (avid.actions.pythonAction.PythonUnaryBatchAction attribute) (avid.actions.pythonAction.PythonUnaryStackBatchAction attribute) (avid.actions.regVarTool.RegVarToolAction attribute) (avid.actions.regVarTool.RegVarToolBatchAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction attribute) (avid.actions.rttb.doseAcc.DoseAccAction attribute) (avid.actions.rttb.doseAcc.DoseAccBatchAction attribute) (avid.actions.rttb.doseMap.DoseMapAction attribute) (avid.actions.rttb.doseMap.DoseMapBatchAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction attribute) (avid.actions.rttb.DoseTool.DoseStatBatchAction attribute) (avid.actions.rttb.DoseTool.DoseToolAction attribute) (avid.actions.rttb.imageAcc.ImageAccAction attribute) (avid.actions.rttb.imageAcc.ImageAccBatchAction attribute) (avid.actions.rttb.voxelizer.VoxelizerAction attribute) (avid.actions.rttb.voxelizer.VoxelizerBatchAction attribute) (avid.actions.SingleActionBase attribute) ACTION_SKIPPED (avid.actions.ActionBase attribute) (avid.actions.artefactRefine.ArtefactRefineAction attribute) (avid.actions.artefactRefine.ArtefactRefineBatchAction attribute) (avid.actions.BatchActionBase attribute) (avid.actions.cliActionBase.CLIActionBase attribute) (avid.actions.dummy.DummyBatchAction attribute) (avid.actions.dummy.DummyCLIAction attribute) (avid.actions.dummy.DummyCLIBatchAction attribute) (avid.actions.dummy.DummySingleAction attribute) (avid.actions.fitting.linearfit.LinearFitAction attribute) (avid.actions.fitting.linearfit.LinearFitBatchAction attribute) (avid.actions.genericCLIAction.GenericCLIAction attribute) (avid.actions.matchpoint.combineR.combineRAction attribute) (avid.actions.matchpoint.combineR.combineRBatchAction attribute) (avid.actions.matchpoint.mapR.mapRAction attribute) (avid.actions.matchpoint.mapR.mapRBatchAction attribute) (avid.actions.matchpoint.matchR.matchRAction attribute) (avid.actions.matchpoint.matchR.matchRBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction attribute) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction attribute) (avid.actions.pointSetConversion.PointSetConversionAction attribute) (avid.actions.pointSetConversion.PointSetConversionBatchAction attribute) (avid.actions.pythonAction.PythonAction attribute) (avid.actions.pythonAction.PythonBinaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchActionV2 attribute) (avid.actions.pythonAction.PythonUnaryBatchAction attribute) (avid.actions.pythonAction.PythonUnaryStackBatchAction attribute) (avid.actions.regVarTool.RegVarToolAction attribute) (avid.actions.regVarTool.RegVarToolBatchAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction attribute) (avid.actions.rttb.doseAcc.DoseAccAction attribute) (avid.actions.rttb.doseAcc.DoseAccBatchAction attribute) (avid.actions.rttb.doseMap.DoseMapAction attribute) (avid.actions.rttb.doseMap.DoseMapBatchAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction attribute) (avid.actions.rttb.DoseTool.DoseStatBatchAction attribute) (avid.actions.rttb.DoseTool.DoseToolAction attribute) (avid.actions.rttb.imageAcc.ImageAccAction attribute) (avid.actions.rttb.imageAcc.ImageAccBatchAction attribute) (avid.actions.rttb.voxelizer.VoxelizerAction attribute) (avid.actions.rttb.voxelizer.VoxelizerBatchAction attribute) (avid.actions.SingleActionBase attribute)

ACTION_SUCCESS (avid.actions.ActionBase attribute) (avid.actions.artefactRefine.ArtefactRefineAction attribute) (avid.actions.artefactRefine.ArtefactRefineBatchAction attribute) (avid.actions.BatchActionBase attribute) (avid.actions.cliActionBase.CLIActionBase attribute) (avid.actions.dummy.DummyBatchAction attribute) (avid.actions.dummy.DummyCLIAction attribute) (avid.actions.dummy.DummyCLIBatchAction attribute) (avid.actions.dummy.DummySingleAction attribute) (avid.actions.fitting.linearfit.LinearFitAction attribute) (avid.actions.fitting.linearfit.LinearFitBatchAction attribute) (avid.actions.genericCLIAction.GenericCLIAction attribute) (avid.actions.matchpoint.combineR.combineRAction attribute) (avid.actions.matchpoint.combineR.combineRBatchAction attribute) (avid.actions.matchpoint.mapR.mapRAction attribute) (avid.actions.matchpoint.mapR.mapRBatchAction attribute) (avid.actions.matchpoint.matchR.matchRAction attribute) (avid.actions.matchpoint.matchR.matchRBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction attribute) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction attribute) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction attribute) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction attribute) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageAction attribute) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction attribute) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction attribute) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction attribute) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction attribute) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction attribute) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction attribute) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction attribute) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction attribute) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareAction attribute) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceAction attribute) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction attribute) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction attribute) (avid.actions.pointSetConversion.PointSetConversionAction attribute) (avid.actions.pointSetConversion.PointSetConversionBatchAction attribute) (avid.actions.pythonAction.PythonAction attribute) (avid.actions.pythonAction.PythonBinaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchAction attribute) (avid.actions.pythonAction.PythonNaryBatchActionV2 attribute) (avid.actions.pythonAction.PythonUnaryBatchAction attribute) (avid.actions.pythonAction.PythonUnaryStackBatchAction attribute) (avid.actions.regVarTool.RegVarToolAction attribute) (avid.actions.regVarTool.RegVarToolBatchAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcAction attribute) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction attribute) (avid.actions.rttb.doseAcc.DoseAccAction attribute) (avid.actions.rttb.doseAcc.DoseAccBatchAction attribute) (avid.actions.rttb.doseMap.DoseMapAction attribute) (avid.actions.rttb.doseMap.DoseMapBatchAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction attribute) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction attribute) (avid.actions.rttb.DoseTool.DoseStatBatchAction attribute) (avid.actions.rttb.DoseTool.DoseToolAction attribute) (avid.actions.rttb.imageAcc.ImageAccAction attribute) (avid.actions.rttb.imageAcc.ImageAccBatchAction attribute) (avid.actions.rttb.voxelizer.VoxelizerAction attribute) (avid.actions.rttb.voxelizer.VoxelizerBatchAction attribute) (avid.actions.SingleActionBase attribute) ActionBase (class in avid.actions) ActionBatchGenerator (class in avid.actions.actionBatchGenerator) ACTIONTAG (in module avid.common.artefact.defaultProps) ActionTagSelector (class in avid.selectors.keyValueSelector) add_artefact() (avid.common.artefact.ArtefactCollection method) (avid.common.workflow.Session method) add_task() (avid.common.console_abstraction.Progress method) addProcessedActionInstance() (avid.common.workflow.Session method) AndLinker (class in avid.linkers) AndSelector (class in avid.selectors) Artefact (class in avid.common.artefact) ArtefactCollection (class in avid.common.artefact) ArtefactRefineAction (class in avid.actions.artefactRefine) ArtefactRefineBatchAction (class in avid.actions.artefactRefine) ask() (avid.common.console_abstraction.ConsoleConfirm static method) (avid.common.console_abstraction.ConsolePrompt static method) avid module avid.actions module avid.actions.actionBatchGenerator module avid.actions.artefactRefine module avid.actions.cliActionBase module avid.actions.cliBatchScheduler module avid.actions.dummy module avid.actions.fitting module avid.actions.fitting.linearfit module avid.actions.genericCLIAction module avid.actions.matchpoint module avid.actions.matchpoint.combineR module avid.actions.matchpoint.mapR module avid.actions.matchpoint.matchR module avid.actions.mitk module avid.actions.mitk.MitkCLGlobalImageFeatures module avid.actions.mitk.MitkFileConverter module avid.actions.mitk.MitkFuse3Dto4DImage module avid.actions.mitk.MitkGIFeatureValueCollector module avid.actions.mitk.MitkMapImage module avid.actions.mitk.MitkMatchImage module avid.actions.mitk.MitkMRPerfusion module avid.actions.mitk.MitkMRSignal2Concentration module avid.actions.mitk.MitkResampleImage module avid.actions.mitk.MitkResampleMask module avid.actions.mitk.MitkSplit4Dto3DImages module avid.actions.mitk.MitkStitchImages module avid.actions.mitk.taskListGenerator module avid.actions.plastimatch module avid.actions.plastimatch.plmCompare module avid.actions.plastimatch.plmDice module avid.actions.plastimatch.plmRTSSMap module avid.actions.pointSetConversion module avid.actions.pythonAction module avid.actions.regVarTool module avid.actions.rttb module avid.actions.rttb.bioModelCalc module avid.actions.rttb.doseAcc module avid.actions.rttb.doseMap module avid.actions.rttb.doseStatsCollector module avid.actions.rttb.DoseTool module avid.actions.rttb.imageAcc module avid.actions.rttb.voxelizer module avid.actions.simpleScheduler module avid.actions.testingScheduler module avid.actions.threadingScheduler module avid.cli module avid.cli.avidconfig module avid.cli.aviddiag module avid.cli.avidsplit module avid.common module avid.common.artefact module avid.common.artefact.crawler module avid.common.artefact.defaultProps module avid.common.artefact.fileHelper module avid.common.artefact.generator module avid.common.AVIDUrlLocater module avid.common.cliConnector module avid.common.cliConnector.container module avid.common.cliConnector.lsf module avid.common.config_manager module avid.common.console_abstraction module avid.common.customTags module avid.common.demultiplexer module avid.common.dvhTxtFileLoader module avid.common.osChecker module avid.common.patientNumber module avid.common.templateFileCustomizer module avid.common.workflow module avid.common.workflow.report module avid.common.workflow.structure_definitions module avid.externals module avid.externals.doseTool module avid.externals.fcsv module avid.externals.matchPoint module avid.externals.plastimatch module avid.externals.pointset module avid.externals.virtuos module avid.linkers module avid.linkers.caseInstanceLinker module avid.linkers.fractionLinker module avid.linkers.keyValueLinker module avid.linkers.posLinker module avid.linkers.proximityLinker module avid.selectors module avid.selectors.diagnosticSelector module avid.selectors.keyMulitValueSelector module avid.selectors.keyValueSelector module avid.selectors.multiKeyValueSelector module avid.selectors.validitySelector module avid.sorter module avid.sorter.keyValueSorter module avid.sorter.timePointSorter module avid.splitter module avid.splitter.keyValueSplitter module avid.splitter.singleSplitter module

B

BaseSorter (class in avid.sorter) BaseSplitter (class in avid.splitter) BatchActionBase (class in avid.actions)

BioModelCalcAction (class in avid.actions.rttb.bioModelCalc) BioModelCalcBatchAction (class in avid.actions.rttb.bioModelCalc) build_parser() (in module avid.cli.avidconfig)

C

calculateNormDoseCorrected() (in module avid.externals.virtuos) CASE (in module avid.common.artefact.defaultProps) CASEINSTANCE (in module avid.common.artefact.defaultProps) CaseInstanceLinker (class in avid.linkers.caseInstanceLinker) CaseInstanceSelector (class in avid.selectors.keyValueSelector) CaseLinker (class in avid.linkers.keyValueLinker) CaseSelector (class in avid.selectors.keyValueSelector) CaseSplitter (class in avid.splitter.keyValueSplitter) checkAndCreateDir() (in module avid.common.osChecker) CLIActionBase (class in avid.actions.cliActionBase) CLIBatchScheduler (class in avid.actions.cliBatchScheduler) clone() (avid.common.artefact.Artefact method) cmd_package_install() (in module avid.cli.avidconfig) cmd_package_list() (in module avid.cli.avidconfig) cmd_settings_get() (in module avid.cli.avidconfig) cmd_settings_list() (in module avid.cli.avidconfig) cmd_settings_set() (in module avid.cli.avidconfig) cmd_settings_unset() (in module avid.cli.avidconfig) cmd_setup() (in module avid.cli.avidconfig) cmd_tool_add() (in module avid.cli.avidconfig) cmd_tool_info() (in module avid.cli.avidconfig) cmd_tool_list() (in module avid.cli.avidconfig) cmd_tool_remove() (in module avid.cli.avidconfig) cmd_tool_settings_get() (in module avid.cli.avidconfig) cmd_tool_settings_list() (in module avid.cli.avidconfig) cmd_tool_settings_set() (in module avid.cli.avidconfig) cmd_tool_settings_unset() (in module avid.cli.avidconfig) collect_keys_from_config_dict() (in module avid.common.config_manager) collection_is_similar() (avid.common.artefact.ArtefactCollection method) ColumnsType (in module avid.common.console_abstraction) combineRAction (class in avid.actions.matchpoint.combineR) combineRBatchAction (class in avid.actions.matchpoint.combineR) configureExternalFile() (in module avid.externals) confirm_ask() (in module avid.common.console_abstraction) ConfirmType (in module avid.common.console_abstraction) Console (class in avid.common.console_abstraction) ConsoleColumns (class in avid.common.console_abstraction) ConsoleConfirm (class in avid.common.console_abstraction) ConsolePadding (class in avid.common.console_abstraction) ConsolePanel (class in avid.common.console_abstraction) ConsolePretty (class in avid.common.console_abstraction) ConsolePrompt (class in avid.common.console_abstraction) ConsoleTable (class in avid.common.console_abstraction)

ConsoleTraceback (class in avid.common.console_abstraction) ContainerCLIConnectorBase (class in avid.common.cliConnector.container) contentPath (avid.common.workflow.Session property) crawl_filter_by_filename() (in module avid.common.artefact.crawler) crawl_property_by_filename() (in module avid.common.artefact.crawler) crawl_property_by_path() (in module avid.common.artefact.crawler) create_actions_report() (in module avid.common.workflow.report) create_columns() (in module avid.common.console_abstraction) create_padding() (in module avid.common.console_abstraction) create_panel() (in module avid.common.console_abstraction) create_pretty() (in module avid.common.console_abstraction) create_table() (in module avid.common.console_abstraction) create_traceback_from_exception() (in module avid.common.console_abstraction) createBatchFileReplacePatternList() (in module avid.externals.virtuos) createPlanPatternDictionary() (in module avid.externals.virtuos) cwd (avid.actions.cliActionBase.CLIActionBase property) (avid.actions.dummy.DummyCLIAction property) (avid.actions.fitting.linearfit.LinearFitAction property) (avid.actions.genericCLIAction.GenericCLIAction property) (avid.actions.matchpoint.combineR.combineRAction property) (avid.actions.matchpoint.mapR.mapRAction property) (avid.actions.matchpoint.matchR.matchRAction property) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction property) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction property) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction property) (avid.actions.mitk.MitkMapImage.MitkMapImageAction property) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction property) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction property) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction property) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction property) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction property) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction property) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction property) (avid.actions.plastimatch.plmCompare.PlmCompareAction property) (avid.actions.plastimatch.plmDice.PlmDiceAction property) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction property) (avid.actions.regVarTool.RegVarToolAction property) (avid.actions.rttb.bioModelCalc.BioModelCalcAction property) (avid.actions.rttb.doseAcc.DoseAccAction property) (avid.actions.rttb.doseMap.DoseMapAction property) (avid.actions.rttb.DoseTool.DoseToolAction property) (avid.actions.rttb.imageAcc.ImageAccAction property) (avid.actions.rttb.voxelizer.VoxelizerAction property)

D

daemon (avid.actions.threadingScheduler.Worker property) default_artefact_url_extraction_delegate() (in module avid.common.cliConnector) DefaultCLIConnector (class in avid.common.cliConnector) Demultiplexer (class in avid.common.demultiplexer) DIAGRAM_TYPE (in module avid.common.artefact.defaultProps) DirectoryCrawler (class in avid.common.artefact.crawler) do() (avid.actions.ActionBase method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.SingleActionBase method) do_finalize() (avid.actions.ActionBase method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.SingleActionBase method) do_processing() (avid.actions.ActionBase method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.SingleActionBase method)

do_setup() (avid.actions.ActionBase method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.SingleActionBase method) DOSE_STAT (in module avid.common.artefact.defaultProps) DoseAccAction (class in avid.actions.rttb.doseAcc) DoseAccBatchAction (class in avid.actions.rttb.doseAcc) DoseMapAction (class in avid.actions.rttb.doseMap) DoseMapBatchAction (class in avid.actions.rttb.doseMap) DoseProperty (class in avid.externals.doseTool) DoseStatBatchAction (class in avid.actions.rttb.DoseTool) DoseStatsCollectorAction (class in avid.actions.rttb.doseStatsCollector) DoseStatsCollectorBatchAction (class in avid.actions.rttb.doseStatsCollector) DoseStatSelector (class in avid.selectors.keyValueSelector) DoseToolAction (class in avid.actions.rttb.DoseTool) DoseToolResultContainer (class in avid.externals.doseTool) download_with_progress() (in module avid.cli.avidconfig) DummyBatchAction (class in avid.actions.dummy) DummyCLIAction (class in avid.actions.dummy) DummyCLIBatchAction (class in avid.actions.dummy) DummySingleAction (class in avid.actions.dummy) DVHContainer (class in avid.common.dvhTxtFileLoader) DVHType (class in avid.common.dvhTxtFileLoader)

E

ensure_dir() (in module avid.common.config_manager) ensure_existence() (in module avid.common.AVIDUrlLocater) ensure_file_availability() (avid.common.cliConnector.container.ContainerCLIConnectorBase static method) (avid.common.cliConnector.DefaultCLIConnector static method) (avid.common.cliConnector.lsf.LSFCLIConnector static method) (avid.common.cliConnector.URLMappingCLIConnectorBase static method)

ensureCaseInstanceValidity() (in module avid.common.artefact) ensureMAPRegistrationArtefact() (in module avid.externals.matchPoint) ensureSimilarityRelevantProperty() (in module avid.common.artefact) ensureValidPath() (in module avid.common.artefact) EXECUTION_DURATION (in module avid.common.artefact.defaultProps)

F

find_similar() (avid.common.artefact.ArtefactCollection method) first() (avid.common.artefact.ArtefactCollection method) FORMAT (in module avid.common.artefact.defaultProps) FORMAT_VALUE_BAT (in module avid.common.artefact.defaultProps) FORMAT_VALUE_CSV (in module avid.common.artefact.defaultProps) FORMAT_VALUE_DCM (in module avid.common.artefact.defaultProps) FORMAT_VALUE_HELAX_DCM (in module avid.common.artefact.defaultProps) FORMAT_VALUE_ITK (in module avid.common.artefact.defaultProps) FORMAT_VALUE_ITK_TRANSFORM (in module avid.common.artefact.defaultProps) FORMAT_VALUE_JSON (in module avid.common.artefact.defaultProps)

FORMAT_VALUE_MATCHPOINT (in module avid.externals.matchPoint) FORMAT_VALUE_R (in module avid.common.artefact.defaultProps) FORMAT_VALUE_RTTB_CUM_DVH_XML (in module avid.common.artefact.defaultProps) FORMAT_VALUE_RTTB_STATS_XML (in module avid.common.artefact.defaultProps) FORMAT_VALUE_UNDEFINED (in module avid.common.artefact.defaultProps) FORMAT_VALUE_XML (in module avid.common.artefact.defaultProps) FormatSelector (class in avid.selectors.keyValueSelector) FractionLinker (class in avid.linkers.fractionLinker) FractionSplitter (class in avid.splitter.keyValueSplitter) fullname (avid.externals.doseTool.DoseProperty property)

G

generate_artefact_entry() (in module avid.common.artefact.generator) generate_cli_call() (in module avid.actions.genericCLIAction) generate_cli_file() (avid.common.cliConnector.container.ContainerCLIConnectorBase method) (avid.common.cliConnector.DefaultCLIConnector method) (avid.common.cliConnector.lsf.LSFCLIConnector method) (avid.common.cliConnector.URLMappingCLIConnectorBase method) generateActions() (avid.actions.actionBatchGenerator.ActionBatchGenerator method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) generateArtefact() (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.SingleActionBase method) generateArtefactEntry() (in module avid.common.artefact.generator) generateArtefactPath() (in module avid.common.artefact) generateBatchFile() (in module avid.externals.virtuos) generateBatchPath() (in module avid.actions.cliBatchScheduler) generateDefaultArtefactPath() (in module avid.common.artefact) generateFlatArtefactPath() (in module avid.common.artefact) generateSimpleMAPRegistrationWrapper() (in module avid.externals.matchPoint) generateVerboseArtefactPath() (in module avid.common.artefact) GenericCLIAction (class in avid.actions.genericCLIAction) get_all_known_packages() (in module avid.cli.avidconfig) get_all_values_of_a_property() (in module avid.common.artefact) get_and_unpack_mitk() (in module avid.cli.avidconfig) get_artefact_url_extraction_delegate() (avid.common.cliConnector.container.ContainerCLIConnectorBase method) (avid.common.cliConnector.DefaultCLIConnector method) (avid.common.cliConnector.lsf.LSFCLIConnector method) (avid.common.cliConnector.URLMappingCLIConnectorBase method) get_avid_package_root_dir() (in module avid.common.AVIDUrlLocater) get_executable_url() (avid.common.cliConnector.container.ContainerCLIConnectorBase method) (avid.common.cliConnector.DefaultCLIConnector method) (avid.common.cliConnector.lsf.LSFCLIConnector method) (avid.common.cliConnector.URLMappingCLIConnectorBase method) get_input_artefact_ids() (in module avid.selectors.diagnosticSelector) get_logging_handler() (in module avid.common.console_abstraction) get_setting() (in module avid.common.config_manager) get_setting_from_dict() (in module avid.common.config_manager) get_tool_config_dir() (in module avid.common.AVIDUrlLocater) get_tool_config_file_path() (in module avid.common.AVIDUrlLocater) get_tool_executable_url() (in module avid.common.AVIDUrlLocater) get_tool_package_config_dir() (in module avid.common.AVIDUrlLocater) get_tool_package_source_config_path() (in module avid.common.AVIDUrlLocater) get_tool_package_tools_config_path() (in module avid.common.AVIDUrlLocater) get_user_config_dir() (in module avid.common.config_manager) get_user_config_file_path() (in module avid.common.config_manager) get_user_data_dir() (in module avid.common.config_manager) get_user_tool_config_dir() (in module avid.common.config_manager) get_user_tool_config_file_path() (in module avid.common.config_manager) get_user_tools_default_root_dir() (in module avid.common.config_manager) get_user_tools_root_dir() (in module avid.common.config_manager) get_valid_scope() (in module avid.common.config_manager) get_venv_config_dir() (in module avid.common.config_manager) get_venv_config_file_path() (in module avid.common.config_manager) get_venv_data_dir() (in module avid.common.config_manager) get_venv_root_dir() (in module avid.common.config_manager) get_venv_tool_config_dir() (in module avid.common.config_manager) get_venv_tool_config_file_path() (in module avid.common.config_manager) get_venv_tools_default_root_dir() (in module avid.common.config_manager) get_venv_tools_root_dir() (in module avid.common.config_manager) getArtefactProperty() (in module avid.common.artefact) getArtefacts() (avid.common.artefact.crawler.DirectoryCrawler method) getArtefactShortName() (in module avid.common.artefact) getDeformationFieldPath() (in module avid.externals.matchPoint) getFailedActions() (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.common.workflow.Session method)

getFileExtensions() (in module avid.externals.virtuos) getLinkedSelection() (avid.linkers.AndLinker method) (avid.linkers.caseInstanceLinker.CaseInstanceLinker method) (avid.linkers.fractionLinker.FractionLinker method) (avid.linkers.InnerLinkerBase method) (avid.linkers.keyValueLinker.CaseLinker method) (avid.linkers.keyValueLinker.KeyValueLinker method) (avid.linkers.keyValueLinker.TimePointLinker method) (avid.linkers.LinkerBase method) (avid.linkers.posLinker.PosLinker method) (avid.linkers.proximityLinker.ProximityLinker method) (avid.linkers.proximityLinker.TimePointProximityLinker method) getName() (avid.actions.threadingScheduler.Worker method) getNumberOfPatients() (in module avid.common.patientNumber) getPatientsList() (in module avid.common.patientNumber) getProperty() (avid.externals.doseTool.DoseToolResultContainer method) getSelection() (avid.selectors.AndSelector method) (avid.selectors.diagnosticSelector.IsInputSelector method) (avid.selectors.diagnosticSelector.IsPrimeInvalidSelector method) (avid.selectors.diagnosticSelector.RootSelector method) (avid.selectors.keyMulitValueSelector.KeyMultiValueSelector method) (avid.selectors.keyMulitValueSelector.MultiActionTagSelector method) (avid.selectors.keyMulitValueSelector.MultiCaseInstanceSelector method) (avid.selectors.keyMulitValueSelector.MultiCaseSelector method) (avid.selectors.keyMulitValueSelector.MultiFormatSelector method) (avid.selectors.keyMulitValueSelector.MultiObjectiveSelector method) (avid.selectors.keyMulitValueSelector.MultiStatSelector method) (avid.selectors.keyMulitValueSelector.MultiTimepointSelector method) (avid.selectors.keyMulitValueSelector.MultiTypeSelector method) (avid.selectors.keyValueSelector.ActionTagSelector method) (avid.selectors.keyValueSelector.CaseInstanceSelector method) (avid.selectors.keyValueSelector.CaseSelector method) (avid.selectors.keyValueSelector.DoseStatSelector method) (avid.selectors.keyValueSelector.FormatSelector method) (avid.selectors.keyValueSelector.KeyValueSelector method) (avid.selectors.keyValueSelector.ObjectiveSelector method) (avid.selectors.keyValueSelector.ResultSelector method) (avid.selectors.keyValueSelector.TimepointSelector method) (avid.selectors.keyValueSelector.TypeSelector method) (avid.selectors.LambdaSelector method) (avid.selectors.multiKeyValueSelector.MultiKeyValueSelector method) (avid.selectors.NotSelector method) (avid.selectors.OrSelector method) (avid.selectors.SelectorBase method) (avid.selectors.validitySelector.ValiditySelector method) (avid.selectors.ValidResultSelector method) getSelectors() (in module avid.common.demultiplexer) getSessionParser() (in module avid.common.workflow) getSkippedActions() (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.common.workflow.Session method) getSuccessfulActions() (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.common.workflow.Session method) getSuccessfulActionsWithWarnings() (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.common.workflow.Session method) getValueFromPlan() (in module avid.externals.virtuos) getValuesFromPlan() (in module avid.externals.virtuos)

H

hasFailedActions() (avid.common.workflow.Session method)

I

ID (in module avid.common.artefact.defaultProps) ident (avid.actions.threadingScheduler.Worker property) identical_artefact_exists() (avid.common.artefact.ArtefactCollection method) ImageAccAction (class in avid.actions.rttb.imageAcc) ImageAccBatchAction (class in avid.actions.rttb.imageAcc) in_venv() (in module avid.common.config_manager) indent() (in module avid.common.artefact.fileHelper) indicateOutputs() (avid.actions.ActionBase method) (avid.actions.artefactRefine.ArtefactRefineAction method) (avid.actions.artefactRefine.ArtefactRefineBatchAction method) (avid.actions.BatchActionBase method) (avid.actions.cliActionBase.CLIActionBase method) (avid.actions.dummy.DummyBatchAction method) (avid.actions.dummy.DummyCLIAction method) (avid.actions.dummy.DummyCLIBatchAction method) (avid.actions.dummy.DummySingleAction method) (avid.actions.fitting.linearfit.LinearFitAction method) (avid.actions.fitting.linearfit.LinearFitBatchAction method) (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.matchpoint.combineR.combineRBatchAction method) (avid.actions.matchpoint.mapR.mapRAction method) (avid.actions.matchpoint.mapR.mapRBatchAction method) (avid.actions.matchpoint.matchR.matchRAction method) (avid.actions.matchpoint.matchR.matchRBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction method) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction method) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorAction method) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction method) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction method) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction method) (avid.actions.pointSetConversion.PointSetConversionAction method) (avid.actions.pointSetConversion.PointSetConversionBatchAction method) (avid.actions.pythonAction.PythonAction method) (avid.actions.pythonAction.PythonBinaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchAction method) (avid.actions.pythonAction.PythonNaryBatchActionV2 method) (avid.actions.pythonAction.PythonUnaryBatchAction method) (avid.actions.pythonAction.PythonUnaryStackBatchAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.regVarTool.RegVarToolBatchAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcAction method) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction method) (avid.actions.rttb.doseAcc.DoseAccAction method) (avid.actions.rttb.doseAcc.DoseAccBatchAction method) (avid.actions.rttb.doseMap.DoseMapAction method) (avid.actions.rttb.doseMap.DoseMapBatchAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorAction method) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction method) (avid.actions.rttb.DoseTool.DoseStatBatchAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.imageAcc.ImageAccAction method) (avid.actions.rttb.imageAcc.ImageAccBatchAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method) (avid.actions.rttb.voxelizer.VoxelizerBatchAction method) (avid.actions.SingleActionBase method)

initSession() (in module avid.common.workflow) initSession_byCLIargs() (in module avid.common.workflow) InnerLinkerBase (class in avid.linkers) INPUT_IDS (in module avid.common.artefact.defaultProps) inspect() (in module avid.common.console_abstraction) install_package() (in module avid.cli.avidconfig) install_tool_from_package() (in module avid.cli.avidconfig) INVALID (in module avid.common.artefact.defaultProps) is_alive() (avid.actions.threadingScheduler.Worker method) is_identical() (avid.common.artefact.Artefact method) is_rich_object() (in module avid.common.console_abstraction) is_similar() (avid.common.artefact.Artefact method) is_terminal (avid.common.console_abstraction.Console property) isDaemon() (avid.actions.threadingScheduler.Worker method) IsInputSelector (class in avid.selectors.diagnosticSelector) IsPrimeInvalidSelector (class in avid.selectors.diagnosticSelector) isVirtuosFile() (in module avid.externals.virtuos) isWindows() (in module avid.common.osChecker)

J

join() (avid.actions.threadingScheduler.Worker method)

K

KeyMultiValueSelector (class in avid.selectors.keyMulitValueSelector) KeyValueLinker (class in avid.linkers.keyValueLinker)

KeyValueSelector (class in avid.selectors.keyValueSelector) KeyValueSorter (class in avid.sorter.keyValueSorter) KeyValueSplitter (class in avid.splitter.keyValueSplitter)

L

LambdaSelector (class in avid.selectors) last() (avid.common.artefact.ArtefactCollection method) lastStoredLocationPath (avid.common.workflow.Session property) LinearFitAction (class in avid.actions.fitting.linearfit) LinearFitBatchAction (class in avid.actions.fitting.linearfit) LinkerBase (class in avid.linkers) load_artefact_collection_from_xml() (in module avid.common.artefact.fileHelper) load_merged_config() (in module avid.common.config_manager) load_user_config() (in module avid.common.config_manager) load_user_tool_config() (in module avid.common.config_manager) load_venv_config() (in module avid.common.config_manager) load_venv_tool_config() (in module avid.common.config_manager) loadResult() (in module avid.externals.doseTool) loadStructurDefinition_xml() (in module avid.common.workflow.structure_definitions) logErrorFilePath (avid.actions.cliActionBase.CLIActionBase property) (avid.actions.dummy.DummyCLIAction property) (avid.actions.fitting.linearfit.LinearFitAction property) (avid.actions.genericCLIAction.GenericCLIAction property) (avid.actions.matchpoint.combineR.combineRAction property) (avid.actions.matchpoint.mapR.mapRAction property) (avid.actions.matchpoint.matchR.matchRAction property) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction property) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction property) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction property) (avid.actions.mitk.MitkMapImage.MitkMapImageAction property) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction property) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction property) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction property) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction property) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction property) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction property) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction property) (avid.actions.plastimatch.plmCompare.PlmCompareAction property) (avid.actions.plastimatch.plmDice.PlmDiceAction property) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction property) (avid.actions.regVarTool.RegVarToolAction property) (avid.actions.rttb.bioModelCalc.BioModelCalcAction property) (avid.actions.rttb.doseAcc.DoseAccAction property) (avid.actions.rttb.doseMap.DoseMapAction property) (avid.actions.rttb.DoseTool.DoseToolAction property) (avid.actions.rttb.imageAcc.ImageAccAction property) (avid.actions.rttb.voxelizer.VoxelizerAction property)

logFilePath (avid.actions.cliActionBase.CLIActionBase property) (avid.actions.dummy.DummyCLIAction property) (avid.actions.fitting.linearfit.LinearFitAction property) (avid.actions.genericCLIAction.GenericCLIAction property) (avid.actions.matchpoint.combineR.combineRAction property) (avid.actions.matchpoint.mapR.mapRAction property) (avid.actions.matchpoint.matchR.matchRAction property) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesAction property) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction property) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageAction property) (avid.actions.mitk.MitkMapImage.MitkMapImageAction property) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction property) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionAction property) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction property) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction property) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction property) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction property) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction property) (avid.actions.plastimatch.plmCompare.PlmCompareAction property) (avid.actions.plastimatch.plmDice.PlmDiceAction property) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction property) (avid.actions.regVarTool.RegVarToolAction property) (avid.actions.rttb.bioModelCalc.BioModelCalcAction property) (avid.actions.rttb.doseAcc.DoseAccAction property) (avid.actions.rttb.doseMap.DoseMapAction property) (avid.actions.rttb.DoseTool.DoseToolAction property) (avid.actions.rttb.imageAcc.ImageAccAction property) (avid.actions.rttb.voxelizer.VoxelizerAction property) logger (in module avid.common.artefact) (in module avid.externals.matchPoint) (in module avid.externals.plastimatch) LSFCLIConnector (class in avid.common.cliConnector.lsf)

M

main() (in module avid.cli.avidconfig) (in module avid.cli.aviddiag) (in module avid.cli.avidsplit) mapRAction (class in avid.actions.matchpoint.mapR) mapRBatchAction (class in avid.actions.matchpoint.mapR) matchRAction (class in avid.actions.matchpoint.matchR) matchRBatchAction (class in avid.actions.matchpoint.matchR) MitkCLGlobalImageFeaturesAction (class in avid.actions.mitk.MitkCLGlobalImageFeatures) MitkCLGlobalImageFeaturesBatchAction (class in avid.actions.mitk.MitkCLGlobalImageFeatures) MitkCLGlobalImageFeaturesLegacyCSVBatchAction (class in avid.actions.mitk.MitkCLGlobalImageFeatures) MitkFileConverterAction (class in avid.actions.mitk.MitkFileConverter) MitkFileConverterBatchAction (class in avid.actions.mitk.MitkFileConverter) MitkFuse3Dto4DImageAction (class in avid.actions.mitk.MitkFuse3Dto4DImage) MitkFuse3Dto4DImageBatchAction (class in avid.actions.mitk.MitkFuse3Dto4DImage) MitkGIFeatureValueCollectorAction (class in avid.actions.mitk.MitkGIFeatureValueCollector) MitkGIFeatureValueCollectorBatchAction (class in avid.actions.mitk.MitkGIFeatureValueCollector) MitkMapImageAction (class in avid.actions.mitk.MitkMapImage) MitkMapImageBatchAction (class in avid.actions.mitk.MitkMapImage) MitkMatchImageAction (class in avid.actions.mitk.MitkMatchImage) MitkMatchImageBatchAction (class in avid.actions.mitk.MitkMatchImage) MitkMRPerfusionAction (class in avid.actions.mitk.MitkMRPerfusion) MitkMRPerfusionBatchAction (class in avid.actions.mitk.MitkMRPerfusion) MitkMRSignal2ConcentrationAction (class in avid.actions.mitk.MitkMRSignal2Concentration) MitkMRSignal2ConcentrationBatchAction (class in avid.actions.mitk.MitkMRSignal2Concentration) MitkResampleImageAction (class in avid.actions.mitk.MitkResampleImage) MitkResampleImageBatchAction (class in avid.actions.mitk.MitkResampleImage) MitkResampleMaskAction (class in avid.actions.mitk.MitkResampleMask) MitkResampleMaskBatchAction (class in avid.actions.mitk.MitkResampleMask) MitkSplit4Dto3DImagesAction (class in avid.actions.mitk.MitkSplit4Dto3DImages) MitkSplit4Dto3DImagesBatchAction (class in avid.actions.mitk.MitkSplit4Dto3DImages) MitkStitchImagesAction (class in avid.actions.mitk.MitkStitchImages) MitkStitchImagesBatchAction (class in avid.actions.mitk.MitkStitchImages) module avid avid.actions avid.actions.actionBatchGenerator avid.actions.artefactRefine avid.actions.cliActionBase avid.actions.cliBatchScheduler avid.actions.dummy avid.actions.fitting avid.actions.fitting.linearfit avid.actions.genericCLIAction avid.actions.matchpoint avid.actions.matchpoint.combineR avid.actions.matchpoint.mapR avid.actions.matchpoint.matchR avid.actions.mitk avid.actions.mitk.MitkCLGlobalImageFeatures avid.actions.mitk.MitkFileConverter avid.actions.mitk.MitkFuse3Dto4DImage avid.actions.mitk.MitkGIFeatureValueCollector avid.actions.mitk.MitkMapImage avid.actions.mitk.MitkMatchImage avid.actions.mitk.MitkMRPerfusion avid.actions.mitk.MitkMRSignal2Concentration avid.actions.mitk.MitkResampleImage avid.actions.mitk.MitkResampleMask avid.actions.mitk.MitkSplit4Dto3DImages avid.actions.mitk.MitkStitchImages avid.actions.mitk.taskListGenerator avid.actions.plastimatch avid.actions.plastimatch.plmCompare avid.actions.plastimatch.plmDice avid.actions.plastimatch.plmRTSSMap avid.actions.pointSetConversion avid.actions.pythonAction avid.actions.regVarTool avid.actions.rttb avid.actions.rttb.bioModelCalc avid.actions.rttb.doseAcc avid.actions.rttb.doseMap avid.actions.rttb.doseStatsCollector avid.actions.rttb.DoseTool avid.actions.rttb.imageAcc avid.actions.rttb.voxelizer avid.actions.simpleScheduler avid.actions.testingScheduler avid.actions.threadingScheduler avid.cli avid.cli.avidconfig avid.cli.aviddiag avid.cli.avidsplit avid.common avid.common.artefact avid.common.artefact.crawler avid.common.artefact.defaultProps avid.common.artefact.fileHelper avid.common.artefact.generator avid.common.AVIDUrlLocater avid.common.cliConnector avid.common.cliConnector.container avid.common.cliConnector.lsf avid.common.config_manager avid.common.console_abstraction avid.common.customTags avid.common.demultiplexer avid.common.dvhTxtFileLoader avid.common.osChecker avid.common.patientNumber avid.common.templateFileCustomizer avid.common.workflow avid.common.workflow.report avid.common.workflow.structure_definitions avid.externals avid.externals.doseTool avid.externals.fcsv avid.externals.matchPoint avid.externals.plastimatch avid.externals.pointset avid.externals.virtuos avid.linkers avid.linkers.caseInstanceLinker avid.linkers.fractionLinker avid.linkers.keyValueLinker avid.linkers.posLinker avid.linkers.proximityLinker avid.selectors avid.selectors.diagnosticSelector avid.selectors.keyMulitValueSelector avid.selectors.keyValueSelector avid.selectors.multiKeyValueSelector avid.selectors.validitySelector avid.sorter avid.sorter.keyValueSorter avid.sorter.timePointSorter avid.splitter avid.splitter.keyValueSplitter avid.splitter.singleSplitter

MultiActionTagSelector (class in avid.selectors.keyMulitValueSelector) MultiCaseInstanceSelector (class in avid.selectors.keyMulitValueSelector) MultiCaseSelector (class in avid.selectors.keyMulitValueSelector) MultiFormatSelector (class in avid.selectors.keyMulitValueSelector) MultiKeyValueSelector (class in avid.selectors.multiKeyValueSelector) MultiObjectiveSelector (class in avid.selectors.keyMulitValueSelector) MultiStatSelector (class in avid.selectors.keyMulitValueSelector) MultiTimepointSelector (class in avid.selectors.keyMulitValueSelector) MultiTypeSelector (class in avid.selectors.keyMulitValueSelector)

N

N_FRACTIONS_FOR_ESTIMATION (in module avid.common.artefact.defaultProps) name (avid.actions.threadingScheduler.Worker property) (avid.externals.doseTool.DoseProperty property) native_id (avid.actions.threadingScheduler.Worker property) normalizePlanFile() (in module avid.externals.virtuos) NotSelector (class in avid.selectors) number_of_actions (avid.actions.artefactRefine.ArtefactRefineBatchAction property) (avid.actions.BatchActionBase property) (avid.actions.dummy.DummyBatchAction property) (avid.actions.dummy.DummyCLIBatchAction property) (avid.actions.fitting.linearfit.LinearFitBatchAction property) (avid.actions.matchpoint.combineR.combineRBatchAction property) (avid.actions.matchpoint.mapR.mapRBatchAction property) (avid.actions.matchpoint.matchR.matchRBatchAction property) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesBatchAction property) (avid.actions.mitk.MitkCLGlobalImageFeatures.MitkCLGlobalImageFeaturesLegacyCSVBatchAction property) (avid.actions.mitk.MitkFileConverter.MitkFileConverterBatchAction property) (avid.actions.mitk.MitkFuse3Dto4DImage.MitkFuse3Dto4DImageBatchAction property) (avid.actions.mitk.MitkGIFeatureValueCollector.MitkGIFeatureValueCollectorBatchAction property) (avid.actions.mitk.MitkMapImage.MitkMapImageBatchAction property) (avid.actions.mitk.MitkMatchImage.MitkMatchImageBatchAction property) (avid.actions.mitk.MitkMRPerfusion.MitkMRPerfusionBatchAction property) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationBatchAction property) (avid.actions.mitk.MitkResampleImage.MitkResampleImageBatchAction property) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskBatchAction property) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesBatchAction property) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesBatchAction property) (avid.actions.mitk.taskListGenerator.TaskListGeneratorAction property) (avid.actions.plastimatch.plmCompare.PlmCompareBatchAction property) (avid.actions.plastimatch.plmDice.PlmDiceBatchAction property) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapBatchAction property) (avid.actions.pointSetConversion.PointSetConversionBatchAction property) (avid.actions.pythonAction.PythonBinaryBatchAction property) (avid.actions.pythonAction.PythonNaryBatchAction property) (avid.actions.pythonAction.PythonNaryBatchActionV2 property) (avid.actions.pythonAction.PythonUnaryBatchAction property) (avid.actions.pythonAction.PythonUnaryStackBatchAction property) (avid.actions.regVarTool.RegVarToolBatchAction property) (avid.actions.rttb.bioModelCalc.BioModelCalcBatchAction property) (avid.actions.rttb.doseAcc.DoseAccBatchAction property) (avid.actions.rttb.doseMap.DoseMapBatchAction property) (avid.actions.rttb.doseStatsCollector.DoseStatsCollectorBatchAction property) (avid.actions.rttb.DoseTool.DoseStatBatchAction property) (avid.actions.rttb.imageAcc.ImageAccBatchAction property) (avid.actions.rttb.voxelizer.VoxelizerBatchAction property)

number_of_last_added (avid.common.artefact.crawler.DirectoryCrawler property) number_of_last_dropped (avid.common.artefact.crawler.DirectoryCrawler property) number_of_last_irrelevant (avid.common.artefact.crawler.DirectoryCrawler property) number_of_last_overwites (avid.common.artefact.crawler.DirectoryCrawler property)

O

OBJECTIVE (in module avid.common.artefact.defaultProps) ObjectiveSelector (class in avid.selectors.keyValueSelector)

ONLY_ESTIMATOR (in module avid.common.artefact.defaultProps) OrSelector (class in avid.selectors)

P

PaddingType (in module avid.common.console_abstraction) PanelType (in module avid.common.console_abstraction) parseCompareResult() (in module avid.externals.plastimatch) parseDiceResult() (in module avid.externals.plastimatch) parseFile() (in module avid.common.dvhTxtFileLoader) parseParameter() (in module avid.common.dvhTxtFileLoader) pathGenerationDelegate() (in module avid.common.artefact) PLANNED_FRACTIONS (in module avid.common.artefact.defaultProps) PlmCompareAction (class in avid.actions.plastimatch.plmCompare) PlmCompareBatchAction (class in avid.actions.plastimatch.plmCompare) PlmDiceAction (class in avid.actions.plastimatch.plmDice) PlmDiceBatchAction (class in avid.actions.plastimatch.plmDice) PlmRTSSMapAction (class in avid.actions.plastimatch.plmRTSSMap) PlmRTSSMapBatchAction (class in avid.actions.plastimatch.plmRTSSMap) PointRepresentation (class in avid.externals.pointset) PointSetConversionAction (class in avid.actions.pointSetConversion) PointSetConversionBatchAction (class in avid.actions.pointSetConversion)

PosLinker (class in avid.linkers.posLinker) PRESCRIBED_DOSE (in module avid.common.artefact.defaultProps) PrettyType (in module avid.common.console_abstraction) print() (avid.common.console_abstraction.Console method) print_action_diagnostics() (in module avid.common.workflow.report) print_actions_overview() (in module avid.common.workflow.report) process_batch() (in module avid.actions.cliBatchScheduler) Progress (class in avid.common.console_abstraction) prompt_ask() (in module avid.common.console_abstraction) PromptType (in module avid.common.console_abstraction) ProximityLinker (class in avid.linkers.proximityLinker) PythonAction (class in avid.actions.pythonAction) PythonBinaryBatchAction (class in avid.actions.pythonAction) PythonNaryBatchAction (class in avid.actions.pythonAction) PythonNaryBatchActionV2 (class in avid.actions.pythonAction) PythonUnaryBatchAction (class in avid.actions.pythonAction) PythonUnaryStackBatchAction (class in avid.actions.pythonAction)

R

read_fcsv() (in module avid.externals.fcsv) read_simple_pointset() (in module avid.externals.matchPoint) readFile() (in module avid.externals.virtuos) refresh() (avid.common.console_abstraction.Progress method) RegVarToolAction (class in avid.actions.regVarTool) RegVarToolBatchAction (class in avid.actions.regVarTool) remove_artefact() (avid.common.artefact.ArtefactCollection method) resetPlanFile() (in module avid.externals.virtuos)

RESULT_SUB_COUNT (in module avid.common.artefact.defaultProps) RESULT_SUB_TAG (in module avid.common.artefact.defaultProps) ResultSelector (class in avid.selectors.keyValueSelector) RootSelector (class in avid.selectors.diagnosticSelector) rule() (avid.common.console_abstraction.Console method) run() (avid.actions.threadingScheduler.Worker method) run_batches() (avid.common.workflow.Session method) runCrawlerScriptMain() (in module avid.common.artefact.crawler)

S

save_artefacts_to_xml() (in module avid.common.artefact.fileHelper) save_user_config() (in module avid.common.config_manager) save_user_tool_config() (in module avid.common.config_manager) save_venv_config() (in module avid.common.config_manager) save_venv_tool_config() (in module avid.common.config_manager) saveSimpleDictAsResultXML() (in module avid.externals.doseTool) SelectorBase (class in avid.selectors) Session (class in avid.common.workflow) set_setting() (in module avid.common.config_manager) set_setting_in_dict() (in module avid.common.config_manager) setAdditionalArguments() (avid.actions.genericCLIAction.GenericCLIAction method) (avid.actions.matchpoint.combineR.combineRAction method) (avid.actions.mitk.MitkFileConverter.MitkFileConverterAction method) (avid.actions.mitk.MitkMapImage.MitkMapImageAction method) (avid.actions.mitk.MitkMatchImage.MitkMatchImageAction method) (avid.actions.mitk.MitkMRSignal2Concentration.MitkMRSignal2ConcentrationAction method) (avid.actions.mitk.MitkResampleImage.MitkResampleImageAction method) (avid.actions.mitk.MitkResampleMask.MitkResampleMaskAction method) (avid.actions.mitk.MitkSplit4Dto3DImages.MitkSplit4Dto3DImagesAction method) (avid.actions.mitk.MitkStitchImages.MitkStitchImagesAction method) (avid.actions.plastimatch.plmCompare.PlmCompareAction method) (avid.actions.plastimatch.plmDice.PlmDiceAction method) (avid.actions.plastimatch.plmRTSSMap.PlmRTSSMapAction method) (avid.actions.regVarTool.RegVarToolAction method) (avid.actions.rttb.DoseTool.DoseToolAction method) (avid.actions.rttb.voxelizer.VoxelizerAction method)

setDaemon() (avid.actions.threadingScheduler.Worker method) setName() (avid.actions.threadingScheduler.Worker method) SETTING_NAMES (class in avid.common.config_manager) setValueInPlan() (in module avid.externals.virtuos) setWorkflowActionTool() (avid.common.workflow.Session method) shortNameGenerationDelegate() (in module avid.common.artefact) similar_artefact_exists() (avid.common.artefact.ArtefactCollection method) SimpleScheduler (class in avid.actions.simpleScheduler) SingleActionBase (class in avid.actions) SingleSplitter (class in avid.splitter.singleSplitter) sortSelection() (avid.sorter.BaseSorter method) (avid.sorter.keyValueSorter.KeyValueSorter method) (avid.sorter.timePointSorter.TimePointSorter method) splitArtefact() (in module avid.common.demultiplexer) splitSelection() (avid.splitter.BaseSplitter method) (avid.splitter.keyValueSplitter.CaseSplitter method) (avid.splitter.keyValueSplitter.FractionSplitter method) (avid.splitter.keyValueSplitter.KeyValueSplitter method) (avid.splitter.singleSplitter.SingleSplitter method) start() (avid.actions.threadingScheduler.Worker method) stop() (avid.common.console_abstraction.Progress method) stripFileExtensions() (in module avid.externals.virtuos)

T

TableType (in module avid.common.console_abstraction) TaskListGeneratorAction (class in avid.actions.mitk.taskListGenerator) TestingScheduler (class in avid.actions.testingScheduler) ThreadingScheduler (class in avid.actions.threadingScheduler) TIMEPOINT (in module avid.common.artefact.defaultProps) TimePointLinker (class in avid.linkers.keyValueLinker) TimePointProximityLinker (class in avid.linkers.proximityLinker) TimepointSelector (class in avid.selectors.keyValueSelector) TimePointSorter (class in avid.sorter.timePointSorter)

TIMESTAMP (in module avid.common.artefact.defaultProps) TOOL_SETTING_NAMES (class in avid.common.config_manager) TracebackType (in module avid.common.console_abstraction) TYPE (in module avid.common.artefact.defaultProps) TYPE_VALUE_CONFIG (in module avid.common.artefact.defaultProps) TYPE_VALUE_INTERIM (in module avid.common.artefact.defaultProps) TYPE_VALUE_MISC (in module avid.common.artefact.defaultProps) TYPE_VALUE_RESULT (in module avid.common.artefact.defaultProps) TypeSelector (class in avid.selectors.keyValueSelector)

U

unset_setting() (in module avid.common.config_manager) unset_setting_in_dict() (in module avid.common.config_manager) update() (avid.common.console_abstraction.Progress method) update_artefactlist() (in module avid.common.artefact.fileHelper)

update_artefacts() (in module avid.common.artefact) updateKeyValueDict() (avid.selectors.multiKeyValueSelector.MultiKeyValueSelector method) URL (in module avid.common.artefact.defaultProps) URLMappingCLIConnectorBase (class in avid.common.cliConnector)

V

ValiditySelector (class in avid.selectors.validitySelector) ValidResultSelector (class in avid.selectors)

VIRTUOS_PLAN_REF (in module avid.common.artefact.defaultProps) VoxelizerAction (class in avid.actions.rttb.voxelizer) VoxelizerBatchAction (class in avid.actions.rttb.voxelizer)

W

Worker (class in avid.actions.threadingScheduler) write_fcsv() (in module avid.externals.fcsv)

write_simple_pointset() (in module avid.externals.matchPoint) writeFile() (in module avid.externals.virtuos) writeFileCustomized() (in module avid.common.templateFileCustomizer)